Click on the below button and paste the link for sharing
Study Identified | Summary of study | Brief SRA description | Manuscript title |
---|---|---|---|
Azhurnaya development | Developmental time-course of Azhurnaya | 70 tissue/timepoints from Azhurnaya developmental stages | The transcriptional landscape of polyploid wheat |
PAMP | PAMP innoculation of seedlings | Leaves innoculated with flg22, chitin and water to study PAMP responses | The transcriptional landscape of polyploid wheat |
spike drought | Spikes with water stress | Water stress was applied to a double haploid population at early booting. RNA was sequenced from spikes. | The transcriptional landscape of polyploid wheat |
CS seedlings spike | Chinese Spring seedling (leaves and roots) and spikes at anthesis | Seedlings of Chinese Spring were divided into leaves and roots, and spikes were collected at anthesis. | The transcriptional landscape of polyploid wheat |
CS vegetative | Chinese Spring leaves and roots from seven leaf stage | Vegetative (seven leaf stage) roots and leaves were harvested from Chinese Spring. | The transcriptional landscape of polyploid wheat |
phosphate | Phosphate starvation in roots and shoots | Transcriptome profiles of wheat variety Chinese Spring (CS) in response to Pi starvation (−P) for 10 days. | Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat |
CS grain | Grain tissue-specific developmental timecourse | Analysis of the cell type specific expression of homeologous genes in the developing wheat grain | Genome interplay in the grain transcriptome of hexaploid bread wheat |
12dpa grain | Grain tissue-specific expression at 12 days post anthesis | Inner pericarp, outer pericarp and endosperm layers from developing grain of bread wheat cv. Holdfast at 12 days post-anthesis. | Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family |
flag leaf | Flag leaf downregulation of GPC | Wild type bread wheat plants and GPC RNAi plants 12 days after anthesis | Effect of the down-regulation of the high Grain Protein Content (GPC) genes on the wheat transcriptome during monocarpic senescence |
grain dissection | Grain tissue-specific developmental timecourse | Transcriptomes of the aleurone and starchy endosperm tissues of the wheat seed (Triticum aestivum) at time points critical to the development of the aleurone layer of 6, 9 and 14 days post anthesis. | Gene expression in the developing aleurone and starchy endosperm of wheat |
stripe rust | Stripe rust infected seedlings | Pool of stripe rust infected wheat leaves | Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors |
septoria | Septoria tritici infected seedlings | Molecular mechanisms underlying the interplay between fungal pathogenicity and host responses at specific growth phases and the factors triggering disease transition. | Transcriptional Reprogramming of Wheat and the Hemibiotrophic Pathogen Septoria tritici during Two Phases of the Compatible Interaction |
fusarium 30 50h | Fusarium head blight infected spikelets | Near isogenic wheat lines, differing in the presence of the Fusarium graminearum FHB-resistance QTL Fhb1 and Qfhs.ifa-5A, under disease pressure (30 and 50 hai) as well as with mock-inoculation | Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.) |
nullitetra | Shoots and leaves of nulli tetra group 1 and group 5 | RNAseq of nulli-tetrasomic wheat lines (shoots and leaves) | Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat |
early grain | Grain tissue-specific developmental timecourse | Gene expression profiling of morphological stage of developing wheat grain | Evaluation of Assembly Strategies Using RNA-Seq Data Associated with Grain Development of Wheat (Triticum aestivum L.) |
stamen pistil | Comparison of stamen, pistil and pistilloidy expression | Transcriptional profiling of pistillody stamen, pistil and stamen in wheat line HTS-1 | Pistillody mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.) |
stripe rust powdery mildew | Stripe rust and powdery mildew timecourse of infection in seedlings | Transcriptome Divergence and Overlap for Wheat in Response to Stripe rust and Powdery Mildew Pathogen Stress | Large-scale transcriptome comparison reveals distinct gene activations in wheat responding to stripe rust and powdery mildew. |
drought heat | Drought and heat stress time-course in seedlings | RNAseq of 1-week old wheat seedling leaves subjected to drought stress, heat stress and their combination before (0h) and after stress (1h or 6h) | Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.) |
4A dormancy | Grain developmental timecourse with 4A dormancy QTL | This study was to identify candidate genes underlying the 4AL QTL for grain dormancy in wheat. RNA was sequenced from pooled NILs segregating for the QTL | Transcriptomic analysis of wheat near-isogenic lines identifies PM19-A1 and A2 as candidates for a major dormancy QTL |
CS development | Developmental time-course of Chinese Spring | Whole transcriptome sequencing of wheat 3B chromosome | Structural and functional partitioning of bread wheat chromosome 3B |
CS 6 tissues | Six unreplicated tissues from Chinese Spring. | Seedlings, roots, leaves, stem, spike and grain from Chinese Spring | An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations |
fusarium 0h to 48h | Timecourse of spikelets inoculated with fusarium head blight | Spikes from NILs for Fhb1 were inoculated with Fusarium graminearum. They were sequenced from 0 to 48 h post innoculation. | Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat |
crown rot | Coleoptile infection with Fusarium pseudograminearum (crown rot) | Coleoptiles inoculated with Fusarium pseudograminearum, mock and treatment were sequenced 3 days post infection. | The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.) |
magnaporthe | Leaves naturally infected with Magnaporthe oryzae | Symptomatic (Magnaporthe oryzae) and nonsymptomatic leaves were sequenced from Bangladesh. | Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae |
PEG | Seedlings with PEG to simulate drought | Seedlings had PEG 6000 applied from 2 to 12 hours. | N/A |
fusarium hormones | spikes innoculated with fusarium head blight and ABA/GA | Spikes were inoculated with Fusarium graminearum and ABA or GA. | Exogenous Abscisic Acid and Gibberellic Acid Elicit Opposing Effects on Fusarium graminearum Infection in Wheat |
CS flag leaf | Chinese Spring flag leaves, 6 timepoints | Chinese Spring flag leaves harvested from ear emergence to 30 days post anthesis. | N/A |
microspores | Microspores in tissue culture and cold | Microspores were harvested after tissue culture and cold treatment. | Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena” |
septoria 2 | Zymoseptoria tritici infected seedlings | Riband seedlings infected with Zymoseptoria tritici. | Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition |
CS fusarium | CS spikes inoculated with fusarium head blight | CS spikes innoculated with Fusarium graminearum. | Development and Validation of Thinopyrum elongatum–Expressed Molecular Markers Specific for the Long Arm of Chromosome 7E |
crown rot 2 | Shoots from NILs segregating for crown rot resistance | Shoots from NILs segregating for resistance to Fusarium pseudograminearum. Inoculated and mock samples. | Transcriptome and Allele Specificity Associated with a 3BL Locus for Fusarium Crown Rot Resistance in Bread Wheat |
cold | Shoots after 2 weeks cold | Shoots after 2 weeks cold to examine cold-induced lipid pathways. | Understanding the Biochemical Basis of Temperature-Induced Lipid Pathway Adjustments in Plants |
stripe rust 2 | Stripe rust infected seedlings | Timecourse of Vuka and Avocet+Yr5 innoculated with stripe rust. | The host-pathogen interaction between wheat and yellow rust induces temporally coordinated waves of gene expression |
synthetic | Developmental time-course of synthetic hexaploid | RNAseq of three tissues of nascent allohexaploid wheat and its following generations, their progenitors, and Chinese Spring | mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat |
flag leaf senescence | Gene expression during a timecourse of flag leaf senescence | Triticum aestivum flag leaf senescence | Identification of transcription factors regulating senescence in wheat through gene regulatory network modelling |
CS meiosis | Chinese Spring early meiosis, early prophase | Transcriptome analysis of early meiosis in wheat in the presence and absence of the Ph1 locus | Genome-wide transcription during early wheat meiosis is independent of synapsis, ploidy level and the Ph1 locus |